This function will take a CSV file containing the path to multiple data folders and argument labels and run opening_act2 function for each data set in the file. It allows you to run a batch of data sets automatically.

opening_act2_batch_run(input_data_file, ref_genome,
output_path = "/Volumes/LabShare/HTGenomics/Opening_act/")

## Arguments

input_data_file String indicating path to file containing instructions. The file must be in CSV format with the following columns (column names in the file must be reproduced exactly as below): path Path to bedGraph file. genotype String indicating the relevant strain mutations, used as the namesake argument to opening_act2. chip_target String indicating the ChIP target protein, to be used as the namesake argument to opening_act2. sample_id The sample ID, to be used as the namesake argument to opening_act2. No default. Character object specifying the genome version, to be used as the genome argument to opening_act2; accepts one of the following options: "SK1Yue" "sacCer3" No default. Character object with a valid path to directory to save output files at. Defaults to '/Volumes/LabShare/HTGenomics/Opening_act/'.

## Examples

# NOT RUN {
opening_act_batch_run(input_data_file="~/Desktop/inputs.csv",
ref_genome="SK1Yue")

opening_act_batch_run(input_data_file="~/Desktop/inputs.csv",
ref_genome="sacCer3", output_path='~/Desktop/')
# }