Get Red1 ChIP-seq summits in WT

Returns all Red1 ChIP-seq summits called in the average of four WT replicates for which -log10 of the peak's p-value is equal or greater than 20.

get_Red1_summits(genome, as_df = FALSE)

Arguments

genome

Character object specifying the genome version; accepts one of the following options:

  1. "SK1Yue"

  2. "sacCer3"

No default.
as_df

Logical specifying whether the output should be returned as a data frame. If FALSE, output is a GRanges object. Defaults to FALSE.

Value

Either a Granges or a data.frame object containing Red1 summits.

Examples

# NOT RUN {
get_Red1_summits(genome='SK1Yue')

get_Red1_summits(genome='sacCer3', as_df=TRUE)
# }