This function allows you to remove the region containing the centromere in each chromosome. The original motivation was to analyse Red1 ChIP-seq data in rec8 mutants (show a strong enrichment around the centromeres).
remove_centromeres(wiggleData, regionSize = 50000)
wiggleData | As a list of the 16 chr wiggle data (output of |
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regionSize | Number indicating the size (in bp) of the region to remove (centered on the centromere of each chromosome). Defaults to 50'000 bp. |
A similar list of the 16 chr wiggle data after removal of the rows for the centromeric regions (both positions and signal) in each chromosome data frame.
# NOT RUN { remove_centromeres(rec8) remove_centromeres(rec8, regionSize = 30000) # }